"""
Simple multithreaded algorithm to show how the 4 phases of a genetic algorithm works
(Evaluation, Selection, Crossover and Mutation)
https://en.wikipedia.org/wiki/Genetic_algorithm
Author: D4rkia
"""
from __future__ import annotations
import random
N_POPULATION = 200
N_SELECTED = 50
MUTATION_PROBABILITY = 0.4
random.seed(random.randint(0, 1000))
def basic(target: str, genes: list[str], debug: bool = True) -> tuple[int, int, str]:
"""
Verify that the target contains no genes besides the ones inside genes variable.
>>> from string import ascii_lowercase
>>> basic("doctest", ascii_lowercase, debug=False)[2]
'doctest'
>>> genes = list(ascii_lowercase)
>>> genes.remove("e")
>>> basic("test", genes)
Traceback (most recent call last):
...
ValueError: ['e'] is not in genes list, evolution cannot converge
>>> genes.remove("s")
>>> basic("test", genes)
Traceback (most recent call last):
...
ValueError: ['e', 's'] is not in genes list, evolution cannot converge
>>> genes.remove("t")
>>> basic("test", genes)
Traceback (most recent call last):
...
ValueError: ['e', 's', 't'] is not in genes list, evolution cannot converge
"""
if N_POPULATION < N_SELECTED:
raise ValueError(f"{N_POPULATION} must be bigger than {N_SELECTED}")
not_in_genes_list = sorted({c for c in target if c not in genes})
if not_in_genes_list:
raise ValueError(
f"{not_in_genes_list} is not in genes list, evolution cannot converge"
)
population = []
for _ in range(N_POPULATION):
population.append("".join([random.choice(genes) for i in range(len(target))]))
generation, total_population = 0, 0
while True:
generation += 1
total_population += len(population)
def evaluate(item: str, main_target: str = target) -> tuple[str, float]:
"""
Evaluate how similar the item is with the target by just
counting each char in the right position
>>> evaluate("Helxo Worlx", Hello World)
["Helxo Worlx", 9]
"""
score = len(
[g for position, g in enumerate(item) if g == main_target[position]]
)
return (item, float(score))
population_score = [evaluate(item) for item in population]
population_score = sorted(population_score, key=lambda x: x[1], reverse=True)
if population_score[0][0] == target:
return (generation, total_population, population_score[0][0])
if debug and generation % 10 == 0:
print(
f"\nGeneration: {generation}"
f"\nTotal Population:{total_population}"
f"\nBest score: {population_score[0][1]}"
f"\nBest string: {population_score[0][0]}"
)
population_best = population[: int(N_POPULATION / 3)]
population.clear()
population.extend(population_best)
population_score = [
(item, score / len(target)) for item, score in population_score
]
def select(parent_1: tuple[str, float]) -> list[str]:
"""Select the second parent and generate new population"""
pop = []
child_n = int(parent_1[1] * 100) + 1
child_n = 10 if child_n >= 10 else child_n
for _ in range(child_n):
parent_2 = population_score[random.randint(0, N_SELECTED)][0]
child_1, child_2 = crossover(parent_1[0], parent_2)
pop.append(mutate(child_1))
pop.append(mutate(child_2))
return pop
def crossover(parent_1: str, parent_2: str) -> tuple[str, str]:
"""Slice and combine two string in a random point"""
random_slice = random.randint(0, len(parent_1) - 1)
child_1 = parent_1[:random_slice] + parent_2[random_slice:]
child_2 = parent_2[:random_slice] + parent_1[random_slice:]
return (child_1, child_2)
def mutate(child: str) -> str:
"""Mutate a random gene of a child with another one from the list"""
child_list = list(child)
if random.uniform(0, 1) < MUTATION_PROBABILITY:
child_list[random.randint(0, len(child)) - 1] = random.choice(genes)
return "".join(child_list)
for i in range(N_SELECTED):
population.extend(select(population_score[int(i)]))
if len(population) > N_POPULATION:
break
if __name__ == "__main__":
target_str = (
"This is a genetic algorithm to evaluate, combine, evolve, and mutate a string!"
)
genes_list = list(
" ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklm"
"nopqrstuvwxyz.,;!?+-*#@^'èéòà€ù=)(&%$£/\\"
)
print(
"\nGeneration: %s\nTotal Population: %s\nTarget: %s"
% basic(target_str, genes_list)
)